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SAMJ: fast image annotation on ImageJ/Fiji via segment anything model.

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Title: SAMJ: fast image annotation on ImageJ/Fiji via segment anything model.
Authors: García-López-de-Haro C; Neuroscience and Life Sciences Department, Universidad Carlos III de Madrid, Getafe, Spain.; Bioimage Analysis Unit, Institut Pasteur, Université Paris Cité, Paris, France., Fuster-Barceló C; Bioengineering Department, Universidad Carlos III de Madrid, Leganes, Spain.; BioVisionCenter, University of Zurich, Zurich, Switzerland., Rueden CT; Center for Quantitative Cell Imaging, University of Wisconsin, Madison, USA., Heras J; Department of Mathematics and Computer Science, University of La Rioja, Logroño, Spain., Ulman V; Centre for Biomedical Image Analysis, Masaryk University, Brno, Czech Republic.; Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic., Franco-Barranco D; MRC Laboratory of Molecular Biology, Cambridge, UK.; Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.; Donostia International Physics Center (DIPC), San Sebastian, Spain., Inés A; Department of Mathematics and Computer Science, University of La Rioja, Logroño, Spain., Eliceiri KW; Center for Quantitative Cell Imaging, University of Wisconsin, Madison, USA., Olivo-Marin JC; Bioimage Analysis Unit, Institut Pasteur, Université Paris Cité, Paris, France.; CNRS UMR 3691, Institut Pasteur, Paris, France.; Faculty of Health Sciences, Universidad Carlos III de Madrid, Getafe, Spain., Tinevez JY; Image Analysis Hub, Institut Pasteur, Université Paris Cité, Paris, France., Sage D; Biomedical Imaging Group and Center for Imaging, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. daniel.sage@epfl.ch., Muñoz-Barrutia A; Neuroscience and Life Sciences Department, Universidad Carlos III de Madrid, Getafe, Spain. mamunozb@ing.uc3m.es.; Bioengineering Division, Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain. mamunozb@ing.uc3m.es.
Source: Nature communications [Nat Commun] 2026 Jun 18; Vol. 17 (1). Date of Electronic Publication: 2026 Jun 18.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22García-López-de-Haro+C%22">García-López-de-Haro C</searchLink>; Neuroscience and Life Sciences Department, Universidad Carlos III de Madrid, Getafe, Spain.; Bioimage Analysis Unit, Institut Pasteur, Université Paris Cité, Paris, France.<br /><searchLink fieldCode="AU" term="%22Fuster-Barceló+C%22">Fuster-Barceló C</searchLink>; Bioengineering Department, Universidad Carlos III de Madrid, Leganes, Spain.; BioVisionCenter, University of Zurich, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Rueden+CT%22">Rueden CT</searchLink>; Center for Quantitative Cell Imaging, University of Wisconsin, Madison, USA.<br /><searchLink fieldCode="AU" term="%22Heras+J%22">Heras J</searchLink>; Department of Mathematics and Computer Science, University of La Rioja, Logroño, Spain.<br /><searchLink fieldCode="AU" term="%22Ulman+V%22">Ulman V</searchLink>; Centre for Biomedical Image Analysis, Masaryk University, Brno, Czech Republic.; Central European Institute of Technology (CEITEC), Masaryk University, Brno, Czech Republic.<br /><searchLink fieldCode="AU" term="%22Franco-Barranco+D%22">Franco-Barranco D</searchLink>; MRC Laboratory of Molecular Biology, Cambridge, UK.; Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.; Donostia International Physics Center (DIPC), San Sebastian, Spain.<br /><searchLink fieldCode="AU" term="%22Inés+A%22">Inés A</searchLink>; Department of Mathematics and Computer Science, University of La Rioja, Logroño, Spain.<br /><searchLink fieldCode="AU" term="%22Eliceiri+KW%22">Eliceiri KW</searchLink>; Center for Quantitative Cell Imaging, University of Wisconsin, Madison, USA.<br /><searchLink fieldCode="AU" term="%22Olivo-Marin+JC%22">Olivo-Marin JC</searchLink>; Bioimage Analysis Unit, Institut Pasteur, Université Paris Cité, Paris, France.; CNRS UMR 3691, Institut Pasteur, Paris, France.; Faculty of Health Sciences, Universidad Carlos III de Madrid, Getafe, Spain.<br /><searchLink fieldCode="AU" term="%22Tinevez+JY%22">Tinevez JY</searchLink>; Image Analysis Hub, Institut Pasteur, Université Paris Cité, Paris, France.<br /><searchLink fieldCode="AU" term="%22Sage+D%22">Sage D</searchLink>; Biomedical Imaging Group and Center for Imaging, Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland. daniel.sage@epfl.ch.<br /><searchLink fieldCode="AU" term="%22Muñoz-Barrutia+A%22">Muñoz-Barrutia A</searchLink>; Neuroscience and Life Sciences Department, Universidad Carlos III de Madrid, Getafe, Spain. mamunozb@ing.uc3m.es.; Bioengineering Division, Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain. mamunozb@ing.uc3m.es.
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