Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.
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| Title: | Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus. |
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| Authors: | Fu S; Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, TX, USA., Chang PL; Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, 90089, CA, USA., Friesen ML; Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, 90089, CA, USA.; Department of Crop and Soil Sciences, Washington State University, Pullman, 99164, WA, USA.; Department of Plant Pathology, Washington State University, Pullman, 99164, WA, USA., Teakle NL; Centre for Ecohydrology, The University of Western Australia, 35 Stirling Highway, Crawley, 6009, WA, Australia.; School of Plant Biology (M084), Faculty of Natural and Agricultural Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, 6009, WA, Australia., Tarone AM; Department of Entomology, Texas A&M University, College Station, 77843, TX, USA., Sze SH; Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, TX, USA. shsze@cse.tamu.edu.; Department of Computer Science and Engineering, Texas A&M University, College Station, 77843, TX, USA. shsze@cse.tamu.edu. |
| Source: | BMC genomics [BMC Genomics] 2019 Jun 06; Vol. 20 (Suppl 5), pp. 425. Date of Electronic Publication: 2019 Jun 06. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 1471-2164 |
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| DOI: | 10.1186/s12864-019-5702-5 |
