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Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.

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Title: Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.
Authors: Ringeling FR; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany., Chakraborty S; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany., Vissers C; Department of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA., Reiman D; Department of Biomedical Engineering, University of Illinois at Chicago, Chicago, IL, USA., Patel AM; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany., Lee KH; Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea., Hong A; Center for RNA Research, Institute for Basic Science (IBS), Seoul, Republic of Korea.; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Park CW; Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea., Reska T; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany., Gagneur J; Department of Informatics, Technical University of Munich, Garching, Germany.; Institute of Human Genetics, Technical University of Munich, Munich, Germany.; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Chang H; Center for RNA Research, Institute for Basic Science (IBS), Seoul, Republic of Korea.; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; School of Biological Sciences, Seoul National University, Seoul, Republic of Korea., Spletter ML; Biomedical Center, Department of Physiological Chemistry, Ludwig-Maximilians-Universität München, Martinsried-Planegg, Germany., Yoon KJ; Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea., Ming GL; Department of Neuroscience and Mahoney Institute for Neurosciences, University of Pennsylvania, Philadelphia, PA, USA., Song H; Department of Neuroscience and Mahoney Institute for Neurosciences, University of Pennsylvania, Philadelphia, PA, USA., Canzar S; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany. canzar@genzentrum.lmu.de.
Source: Nature biotechnology [Nat Biotechnol] 2022 May; Vol. 40 (5), pp. 741-750. Date of Electronic Publication: 2022 Jan 10.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.
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  Data: <searchLink fieldCode="AU" term="%22Ringeling+FR%22">Ringeling FR</searchLink>; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany.<br /><searchLink fieldCode="AU" term="%22Chakraborty+S%22">Chakraborty S</searchLink>; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany.<br /><searchLink fieldCode="AU" term="%22Vissers+C%22">Vissers C</searchLink>; Department of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.<br /><searchLink fieldCode="AU" term="%22Reiman+D%22">Reiman D</searchLink>; Department of Biomedical Engineering, University of Illinois at Chicago, Chicago, IL, USA.<br /><searchLink fieldCode="AU" term="%22Patel+AM%22">Patel AM</searchLink>; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany.<br /><searchLink fieldCode="AU" term="%22Lee+KH%22">Lee KH</searchLink>; Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.<br /><searchLink fieldCode="AU" term="%22Hong+A%22">Hong A</searchLink>; Center for RNA Research, Institute for Basic Science (IBS), Seoul, Republic of Korea.; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.<br /><searchLink fieldCode="AU" term="%22Park+CW%22">Park CW</searchLink>; Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.<br /><searchLink fieldCode="AU" term="%22Reska+T%22">Reska T</searchLink>; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany.<br /><searchLink fieldCode="AU" term="%22Gagneur+J%22">Gagneur J</searchLink>; Department of Informatics, Technical University of Munich, Garching, Germany.; Institute of Human Genetics, Technical University of Munich, Munich, Germany.; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany.<br /><searchLink fieldCode="AU" term="%22Chang+H%22">Chang H</searchLink>; Center for RNA Research, Institute for Basic Science (IBS), Seoul, Republic of Korea.; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; School of Biological Sciences, Seoul National University, Seoul, Republic of Korea.<br /><searchLink fieldCode="AU" term="%22Spletter+ML%22">Spletter ML</searchLink>; Biomedical Center, Department of Physiological Chemistry, Ludwig-Maximilians-Universität München, Martinsried-Planegg, Germany.<br /><searchLink fieldCode="AU" term="%22Yoon+KJ%22">Yoon KJ</searchLink>; Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.<br /><searchLink fieldCode="AU" term="%22Ming+GL%22">Ming GL</searchLink>; Department of Neuroscience and Mahoney Institute for Neurosciences, University of Pennsylvania, Philadelphia, PA, USA.<br /><searchLink fieldCode="AU" term="%22Song+H%22">Song H</searchLink>; Department of Neuroscience and Mahoney Institute for Neurosciences, University of Pennsylvania, Philadelphia, PA, USA.<br /><searchLink fieldCode="AU" term="%22Canzar+S%22">Canzar S</searchLink>; Gene Center, Ludwig-Maximilians-Universität München, Munich, Germany. canzar@genzentrum.lmu.de.
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