Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.

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Title: Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.
Authors: Mc Cartney AM; Genome Informatics Section, Computational and Statistical Genomics Branch, NHGRI, NIH, Bethesda, MD, USA., Shafin K; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Alonge M; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Bzikadze AV; Graduate Program in Bioinformatics and Systems Biology, University of California, San Diego, La Jolla, CA, USA., Formenti G; Laboratory of Neurogenetics of Language and The Vertebrate Genome Lab, The Rockefeller University, New York, NY, USA., Fungtammasan A; DNAnexus, Mountain View, CA, USA., Howe K; Wellcome Sanger Institute, Cambridge, UK., Jain C; Genome Informatics Section, Computational and Statistical Genomics Branch, NHGRI, NIH, Bethesda, MD, USA.; Department of Computational and Data Sciences, Indian Institute of Science, Bangalore, India., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, NHGRI, NIH, Bethesda, MD, USA., Logsdon GA; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Miga KH; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.; Department of Biomolecular Engineering, University of California, Santa Cruz, CA, USA., Mikheenko A; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Shumate A; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA., Soto DC; Genome Center, MIND Institute, Department of Biochemistry and Molecular Medicine, University of California, Davis, CA, USA., Sović I; Pacific Biosciences, Menlo Park, CA, USA.; Digital BioLogic d.o.o., Ivanić-Grad, Croatia., Wood JMD; Wellcome Sanger Institute, Cambridge, UK., Zook JM; Biosystems and Biomaterials Division, National Institute of Standards and Technology, Gaithersburg, MD, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, NHGRI, NIH, Bethesda, MD, USA. adam.phillippy@nih.gov., Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, NHGRI, NIH, Bethesda, MD, USA. arang.rhie@nih.gov.
Source: Nature methods [Nat Methods] 2022 Jun; Vol. 19 (6), pp. 687-695. Date of Electronic Publication: 2022 Mar 31.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE
Database: MEDLINE Ultimate
Description
ISSN:1548-7105
DOI:10.1038/s41592-022-01440-3