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Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies.

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Title: Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies.
Authors: Leonard AS; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland. alexander.leonard@usys.ethz.ch., Crysnanto D; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland., Fang ZH; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland., Heaton MP; U.S. Meat Animal Research Center, USDA-ARS, 844 Road 313, Clay Center, NE, 68933, USA., Vander Ley BL; Great Plains Veterinary Educational Center, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA., Herrera C; Clinic of Reproductive Medicine, Department for Farm Animals, University of Zurich, 8057, Zurich, Switzerland., Bollwein H; Clinic of Reproductive Medicine, Department for Farm Animals, University of Zurich, 8057, Zurich, Switzerland., Bickhart DM; Dairy Forage Research Center, USDA-ARS, 1925 Linden Drive, Madison, WI, 53706, USA., Kuhn KL; U.S. Meat Animal Research Center, USDA-ARS, 844 Road 313, Clay Center, NE, 68933, USA., Smith TPL; U.S. Meat Animal Research Center, USDA-ARS, 844 Road 313, Clay Center, NE, 68933, USA., Rosen BD; Animal Genomics and Improvement Laboratory, USDA-ARS, 10300 Baltimore Ave, Beltsville, MD, 20705, USA. ben.rosen@usda.gov., Pausch H; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland. hubert.pausch@usys.ethz.ch.
Source: Nature communications [Nat Commun] 2022 May 31; Vol. 13 (1), pp. 3012. Date of Electronic Publication: 2022 May 31.
Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies.
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  Data: <searchLink fieldCode="AU" term="%22Leonard+AS%22">Leonard AS</searchLink>; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland. alexander.leonard@usys.ethz.ch.<br /><searchLink fieldCode="AU" term="%22Crysnanto+D%22">Crysnanto D</searchLink>; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Fang+ZH%22">Fang ZH</searchLink>; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Heaton+MP%22">Heaton MP</searchLink>; U.S. Meat Animal Research Center, USDA-ARS, 844 Road 313, Clay Center, NE, 68933, USA.<br /><searchLink fieldCode="AU" term="%22Vander+Ley+BL%22">Vander Ley BL</searchLink>; Great Plains Veterinary Educational Center, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.<br /><searchLink fieldCode="AU" term="%22Herrera+C%22">Herrera C</searchLink>; Clinic of Reproductive Medicine, Department for Farm Animals, University of Zurich, 8057, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Bollwein+H%22">Bollwein H</searchLink>; Clinic of Reproductive Medicine, Department for Farm Animals, University of Zurich, 8057, Zurich, Switzerland.<br /><searchLink fieldCode="AU" term="%22Bickhart+DM%22">Bickhart DM</searchLink>; Dairy Forage Research Center, USDA-ARS, 1925 Linden Drive, Madison, WI, 53706, USA.<br /><searchLink fieldCode="AU" term="%22Kuhn+KL%22">Kuhn KL</searchLink>; U.S. Meat Animal Research Center, USDA-ARS, 844 Road 313, Clay Center, NE, 68933, USA.<br /><searchLink fieldCode="AU" term="%22Smith+TPL%22">Smith TPL</searchLink>; U.S. Meat Animal Research Center, USDA-ARS, 844 Road 313, Clay Center, NE, 68933, USA.<br /><searchLink fieldCode="AU" term="%22Rosen+BD%22">Rosen BD</searchLink>; Animal Genomics and Improvement Laboratory, USDA-ARS, 10300 Baltimore Ave, Beltsville, MD, 20705, USA. ben.rosen@usda.gov.<br /><searchLink fieldCode="AU" term="%22Pausch+H%22">Pausch H</searchLink>; Animal Genomics, ETH Zurich, Universitaetstrasse 2, 8006, Zurich, Switzerland. hubert.pausch@usys.ethz.ch.
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  Data: <searchLink fieldCode="JN" term="%22101528555%22">Nature communications</searchLink> [Nat Commun] 2022 May 31; Vol. 13 (1), pp. 3012. <i>Date of Electronic Publication: </i>2022 May 31.
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