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Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.

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Title: Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.
Authors: Peng K; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Nowicki TS; Department of Pediatrics, Division of Pediatric Hematology/Oncology, University of California, Los Angeles, CA, USA.; Department of Microbiology, Immunology, & Molecular Genetics, University of California, Los Angeles, CA, USA., Campbell K; Department of Medicine, Division of Hematology-Oncology, University of California, Los Angeles, CA, USA., Vahed M; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Peng D; Department of Quantitative and Computational Biology, USC Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA., Meng Y; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Nagareddy A; Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA., Huang YN; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Karlsberg A; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Miller Z; Department of Pharmaceutical Sciences, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Brito J; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Nadel B; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.; Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA., Pak VM; Emory Nell Hodgson School of Nursing, Emory University, Atlanta, GA, USA.; Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, GA, USA., Abedalthagafi MS; Department of Pathology & Laboratory Medicine, Emory University Hospital, Atlanta, GA, USA.; King Salman Center for Disability Research, Riyadh, Saudi Arabia., Burkhardt AM; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Alachkar H; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA., Ribas A; Departments of Medicine (Hematology-Oncology), Surgery (Surgical Oncology) and Molecular & Medical Pharmacology, University of California, Los Angeles, CA, USA., Mangul S; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.; Department of Quantitative and Computational Biology, USC Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.
Source: Briefings in bioinformatics [Brief Bioinform] 2023 Jul 20; Vol. 24 (4).
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Rigorous benchmarking of T-cell receptor repertoire profiling methods for cancer RNA sequencing.
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  Data: <searchLink fieldCode="AU" term="%22Peng+K%22">Peng K</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Nowicki+TS%22">Nowicki TS</searchLink>; Department of Pediatrics, Division of Pediatric Hematology/Oncology, University of California, Los Angeles, CA, USA.; Department of Microbiology, Immunology, & Molecular Genetics, University of California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Campbell+K%22">Campbell K</searchLink>; Department of Medicine, Division of Hematology-Oncology, University of California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Vahed+M%22">Vahed M</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Peng+D%22">Peng D</searchLink>; Department of Quantitative and Computational Biology, USC Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Meng+Y%22">Meng Y</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Nagareddy+A%22">Nagareddy A</searchLink>; Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Huang+YN%22">Huang YN</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Karlsberg+A%22">Karlsberg A</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Miller+Z%22">Miller Z</searchLink>; Department of Pharmaceutical Sciences, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Brito+J%22">Brito J</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Nadel+B%22">Nadel B</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.; Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Pak+VM%22">Pak VM</searchLink>; Emory Nell Hodgson School of Nursing, Emory University, Atlanta, GA, USA.; Department of Epidemiology, Rollins School of Public Health, Emory University, Atlanta, GA, USA.<br /><searchLink fieldCode="AU" term="%22Abedalthagafi+MS%22">Abedalthagafi MS</searchLink>; Department of Pathology & Laboratory Medicine, Emory University Hospital, Atlanta, GA, USA.; King Salman Center for Disability Research, Riyadh, Saudi Arabia.<br /><searchLink fieldCode="AU" term="%22Burkhardt+AM%22">Burkhardt AM</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Alachkar+H%22">Alachkar H</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ribas+A%22">Ribas A</searchLink>; Departments of Medicine (Hematology-Oncology), Surgery (Surgical Oncology) and Molecular & Medical Pharmacology, University of California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Mangul+S%22">Mangul S</searchLink>; Department of Clinical Pharmacy, USC Alfred E. Mann School of Pharmacy and Pharmaceutical Sciences, University of Southern California, Los Angeles, CA, USA.; Department of Quantitative and Computational Biology, USC Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA.
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