VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
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| Title: | VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models. |
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| Authors: | Rangel-Pineros G; The Globe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia.; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom., Almeida A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.; Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom., Beracochea M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom., Sakharova E; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom., Marz M; RNA Bioinformatics, Friedrich Schiller University, Jena, Germany.; European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany., Reyes Muñoz A; Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia., Hölzer M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.; European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany.; Methodology and Research Infrastructure, Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany., Finn RD; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom. |
| Source: | PLoS computational biology [PLoS Comput Biol] 2023 Aug 28; Vol. 19 (8), pp. e1011422. Date of Electronic Publication: 2023 Aug 28 (Print Publication: 2023). |
| Publication Type: | Journal Article; Research Support, Non-U.S. Gov't |
| Journal Info: | Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 1553-7358 |
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| DOI: | 10.1371/journal.pcbi.1011422 |
