View in EDS HTML Full Text PDF Full Text

VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.

Saved in:
Bibliographic Details
Title: VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
Authors: Rangel-Pineros G; The Globe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia.; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom., Almeida A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.; Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom., Beracochea M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom., Sakharova E; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom., Marz M; RNA Bioinformatics, Friedrich Schiller University, Jena, Germany.; European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany., Reyes Muñoz A; Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia., Hölzer M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.; European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany.; Methodology and Research Infrastructure, Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany., Finn RD; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.
Source: PLoS computational biology [PLoS Comput Biol] 2023 Aug 28; Vol. 19 (8), pp. e1011422. Date of Electronic Publication: 2023 Aug 28 (Print Publication: 2023).
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
Full text is not displayed to guests.
FullText Links:
  – Type: pdflink
Text:
  Availability: 1
Header DbId: mdl
DbLabel: MEDLINE Ultimate
An: 37639475
AccessLevel: 2
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 0
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AU" term="%22Rangel-Pineros+G%22">Rangel-Pineros G</searchLink>; The Globe Institute, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.; Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia.; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Almeida+A%22">Almeida A</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, United Kingdom.; Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Beracochea+M%22">Beracochea M</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Sakharova+E%22">Sakharova E</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Marz+M%22">Marz M</searchLink>; RNA Bioinformatics, Friedrich Schiller University, Jena, Germany.; European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany.<br /><searchLink fieldCode="AU" term="%22Reyes+Muñoz+A%22">Reyes Muñoz A</searchLink>; Max Planck Tandem Group in Computational Biology, Department of Biological Sciences, Universidad de los Andes, Bogota, Colombia.<br /><searchLink fieldCode="AU" term="%22Hölzer+M%22">Hölzer M</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.; European Virus Bioinformatics Center, Friedrich Schiller University, Jena, Germany.; Methodology and Research Infrastructure, Genome Competence Center (MF1), Robert Koch Institute, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Finn+RD%22">Finn RD</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, United Kingdom.
– Name: TitleSource
  Label: Source
  Group: Src
  Data: <searchLink fieldCode="JN" term="%22101238922%22">PLoS computational biology</searchLink> [PLoS Comput Biol] 2023 Aug 28; Vol. 19 (8), pp. e1011422. <i>Date of Electronic Publication: </i>2023 Aug 28 (<i>Print Publication: </i>2023).
– Name: TypePub
  Label: Publication Type
  Group: TypPub
  Data: Journal Article; Research Support, Non-U.S. Gov't
– Name: TitleSource
  Label: Journal Info
  Group: Src
  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Public+Library+of+Science%22">Public Library of Science </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>101238922 <i>Publication Model: </i>eCollection <i>Cited Medium: </i>Internet <i>ISSN: </i>1553-7358 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%221553734X%22">1553734X </searchLink><i>NLM ISO Abbreviation: </i>PLoS Comput Biol <i>Subsets: </i>MEDLINE
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=37639475
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1371/journal.pcbi.1011422
    Languages:
      – Code: eng
        Text: English
    PhysicalDescription:
      Pagination:
        StartPage: e1011422
    Titles:
      – TitleFull: VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Rangel-Pineros G
      – PersonEntity:
          Name:
            NameFull: Almeida A
      – PersonEntity:
          Name:
            NameFull: Beracochea M
      – PersonEntity:
          Name:
            NameFull: Sakharova E
      – PersonEntity:
          Name:
            NameFull: Marz M
      – PersonEntity:
          Name:
            NameFull: Reyes Muñoz A
      – PersonEntity:
          Name:
            NameFull: Hölzer M
      – PersonEntity:
          Name:
            NameFull: Finn RD
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 28
              M: 08
              Text: 2023 Aug 28
              Type: published
              Y: 2023
          Identifiers:
            – Type: issn-electronic
              Value: 1553-7358
          Numbering:
            – Type: volume
              Value: 19
            – Type: issue
              Value: 8
          Titles:
            – TitleFull: PLoS computational biology
              Type: main
ResultId 1