View in EDS HTML Full Text PDF Full Text

BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.

Saved in:
Bibliographic Details
Title: BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.
Authors: Strepis N; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands., Dollee D; Department of Pathology and Clinical Bioinformatics, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands., Vrins D; Department of Pathology and Clinical Bioinformatics, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands., Vanneste K; Transversal activities in Applied Genomics, Sciensano, Brussels, Belgium., Bogaerts B; Transversal activities in Applied Genomics, Sciensano, Brussels, Belgium., Carrillo C; Canadian Food Inspection Agency, Ottawa, ON, K1A 0Y9, Canada., Bharat A; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, R3E 3R2, Canada., Horan K; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia., Sherry NL; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia., Seemann T; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia., Howden BP; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia., Hiltemann S; Institute of Pharmaceutical Sciences, Faculty of Chemistry and Pharmacy, University of Freiburg, 79104, Freiburg, Germany., Chindelevitch L; MRC Centre for Global Infectious Disease Analysis, Imperial College London, London, England, UK. l.chindelevitch@imperial.ac.uk., Stubbs AP; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands., Hays JP; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands. j.hays@erasmusmc.nl.
Source: BMC genomics [BMC Genomics] 2025 Jan 10; Vol. 26 (1), pp. 27. Date of Electronic Publication: 2025 Jan 10.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
Full text is not displayed to guests.
FullText Links:
  – Type: pdflink
Text:
  Availability: 1
Header DbId: mdl
DbLabel: MEDLINE Ultimate
An: 39794695
AccessLevel: 2
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 0
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AU" term="%22Strepis+N%22">Strepis N</searchLink>; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands.<br /><searchLink fieldCode="AU" term="%22Dollee+D%22">Dollee D</searchLink>; Department of Pathology and Clinical Bioinformatics, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands.<br /><searchLink fieldCode="AU" term="%22Vrins+D%22">Vrins D</searchLink>; Department of Pathology and Clinical Bioinformatics, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands.<br /><searchLink fieldCode="AU" term="%22Vanneste+K%22">Vanneste K</searchLink>; Transversal activities in Applied Genomics, Sciensano, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Bogaerts+B%22">Bogaerts B</searchLink>; Transversal activities in Applied Genomics, Sciensano, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Carrillo+C%22">Carrillo C</searchLink>; Canadian Food Inspection Agency, Ottawa, ON, K1A 0Y9, Canada.<br /><searchLink fieldCode="AU" term="%22Bharat+A%22">Bharat A</searchLink>; National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB, R3E 3R2, Canada.<br /><searchLink fieldCode="AU" term="%22Horan+K%22">Horan K</searchLink>; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Sherry+NL%22">Sherry NL</searchLink>; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Seemann+T%22">Seemann T</searchLink>; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Howden+BP%22">Howden BP</searchLink>; Microbiological Diagnostic Unit Public Health Laboratory (MDU-PHL), Department of Microbiology & Immunology, University of Melbourne at the Peter Doherty Institute for Infection & Immunity, Melbourne, VIC, Australia.<br /><searchLink fieldCode="AU" term="%22Hiltemann+S%22">Hiltemann S</searchLink>; Institute of Pharmaceutical Sciences, Faculty of Chemistry and Pharmacy, University of Freiburg, 79104, Freiburg, Germany.<br /><searchLink fieldCode="AU" term="%22Chindelevitch+L%22">Chindelevitch L</searchLink>; MRC Centre for Global Infectious Disease Analysis, Imperial College London, London, England, UK. l.chindelevitch@imperial.ac.uk.<br /><searchLink fieldCode="AU" term="%22Stubbs+AP%22">Stubbs AP</searchLink>; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands.<br /><searchLink fieldCode="AU" term="%22Hays+JP%22">Hays JP</searchLink>; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre (Erasmus MC), Rotterdam, The Netherlands. j.hays@erasmusmc.nl.
– Name: TitleSource
  Label: Source
  Group: Src
  Data: <searchLink fieldCode="JN" term="%22100965258%22">BMC genomics</searchLink> [BMC Genomics] 2025 Jan 10; Vol. 26 (1), pp. 27. <i>Date of Electronic Publication: </i>2025 Jan 10.
– Name: TypePub
  Label: Publication Type
  Group: TypPub
  Data: Journal Article
– Name: TitleSource
  Label: Journal Info
  Group: Src
  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central%22">BioMed Central </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100965258 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1471-2164 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214712164%22">14712164 </searchLink><i>NLM ISO Abbreviation: </i>BMC Genomics <i>Subsets: </i>MEDLINE
PLink https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=39794695
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1186/s12864-024-11158-5
    Languages:
      – Code: eng
        Text: English
    PhysicalDescription:
      Pagination:
        StartPage: 27
    Titles:
      – TitleFull: BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Strepis N
      – PersonEntity:
          Name:
            NameFull: Dollee D
      – PersonEntity:
          Name:
            NameFull: Vrins D
      – PersonEntity:
          Name:
            NameFull: Vanneste K
      – PersonEntity:
          Name:
            NameFull: Bogaerts B
      – PersonEntity:
          Name:
            NameFull: Carrillo C
      – PersonEntity:
          Name:
            NameFull: Bharat A
      – PersonEntity:
          Name:
            NameFull: Horan K
      – PersonEntity:
          Name:
            NameFull: Sherry NL
      – PersonEntity:
          Name:
            NameFull: Seemann T
      – PersonEntity:
          Name:
            NameFull: Howden BP
      – PersonEntity:
          Name:
            NameFull: Hiltemann S
      – PersonEntity:
          Name:
            NameFull: Chindelevitch L
      – PersonEntity:
          Name:
            NameFull: Stubbs AP
      – PersonEntity:
          Name:
            NameFull: Hays JP
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 10
              M: 01
              Text: 2025 Jan 10
              Type: published
              Y: 2025
          Identifiers:
            – Type: issn-electronic
              Value: 1471-2164
          Numbering:
            – Type: volume
              Value: 26
            – Type: issue
              Value: 1
          Titles:
            – TitleFull: BMC genomics
              Type: main
ResultId 1