Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases.
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| Title: | Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases. |
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| Authors: | Winand R; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., D'hooge E; BCCM/IHEM collection, Mycology and Aerobiology, Sciensano, 1050, Brussels, Belgium., Van Uffelen A; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.; Department of Information Technology, Internet Technology and Data Science Lab (IDLab), Interuniversity Microelectronics Centre (IMEC), Ghent University, 9052, Ghent, Belgium., Bogaerts B; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Van Braekel J; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Hoffman S; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Roosens NHCJ; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Becker P; BCCM/IHEM collection, Mycology and Aerobiology, Sciensano, 1050, Brussels, Belgium., De Keersmaecker SCJ; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Vanneste K; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium. kevin.vanneste@sciensano.be. |
| Source: | BMC genomics [BMC Genomics] 2025 Aug 06; Vol. 26 (1), pp. 729. Date of Electronic Publication: 2025 Aug 06. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 1471-2164 |
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| DOI: | 10.1186/s12864-025-11917-y |
