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Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases.

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Title: Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases.
Authors: Winand R; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., D'hooge E; BCCM/IHEM collection, Mycology and Aerobiology, Sciensano, 1050, Brussels, Belgium., Van Uffelen A; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.; Department of Information Technology, Internet Technology and Data Science Lab (IDLab), Interuniversity Microelectronics Centre (IMEC), Ghent University, 9052, Ghent, Belgium., Bogaerts B; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Van Braekel J; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Hoffman S; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Roosens NHCJ; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Becker P; BCCM/IHEM collection, Mycology and Aerobiology, Sciensano, 1050, Brussels, Belgium., De Keersmaecker SCJ; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium., Vanneste K; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium. kevin.vanneste@sciensano.be.
Source: BMC genomics [BMC Genomics] 2025 Aug 06; Vol. 26 (1), pp. 729. Date of Electronic Publication: 2025 Aug 06.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases.
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  Data: <searchLink fieldCode="AU" term="%22Winand+R%22">Winand R</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22D'hooge+E%22">D'hooge E</searchLink>; BCCM/IHEM collection, Mycology and Aerobiology, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Van+Uffelen+A%22">Van Uffelen A</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.; Department of Information Technology, Internet Technology and Data Science Lab (IDLab), Interuniversity Microelectronics Centre (IMEC), Ghent University, 9052, Ghent, Belgium.<br /><searchLink fieldCode="AU" term="%22Bogaerts+B%22">Bogaerts B</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Van+Braekel+J%22">Van Braekel J</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Hoffman+S%22">Hoffman S</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Roosens+NHCJ%22">Roosens NHCJ</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Becker+P%22">Becker P</searchLink>; BCCM/IHEM collection, Mycology and Aerobiology, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22De+Keersmaecker+SCJ%22">De Keersmaecker SCJ</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Vanneste+K%22">Vanneste K</searchLink>; Transversal activities in Applied Genomics, Sciensano, 1050, Brussels, Belgium. kevin.vanneste@sciensano.be.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central%22">BioMed Central </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100965258 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1471-2164 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214712164%22">14712164 </searchLink><i>NLM ISO Abbreviation: </i>BMC Genomics <i>Subsets: </i>MEDLINE
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              Text: 2025 Aug 06
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