Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave.
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| Title: | Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave. |
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| Authors: | Lambisia AW; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya. alambisia@kemri-wellcome.org., Katama EN; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Moraa E; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Mwita JM; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Gallagher K; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Department of Infectious Diseases Epidemiology, London, School of Hygiene and Tropical Medicine , Keppel Street, London, UK., Mutunga M; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Nyale E; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Omungala J; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Mwanga M; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Murunga N; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Nyiro J; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Nyagwange J; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya., Sande C; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK., Bejon P; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK., Githinji G; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Pwani University, Kilifi, Kenya., Dellicour S; Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Brussels, Belgium.; Department of Microbiology, Immunology and Transplantation, Rega Institute & Laboratory for Clinical and Epidemiological Virology, University of Leuven, Louvain, KULeuven, , Belgium., Phan MVT; College of Health Solutions, Arizona State University, Phoenix, AZ, USA., Cotten M; College of Health Solutions, Arizona State University, Phoenix, AZ, USA.; Complex Adaptive System Initiative, Arizona State University, Scottsdale, AZ, USA., Ochola-Oyier LI; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; University of Oxford, Oxford, UK., Holmes EC; School of Medical Sciences, University of Sydney, Sydney, Australia., Agoti CN; Kenya Medical Research Institute (KEMRI) - Wellcome Trust Research Programme (KWTRP), Kilifi, Kenya.; Pwani University, Kilifi, Kenya. |
| Source: | BMC global and public health [BMC Glob Public Health] 2025 Sep 09; Vol. 3 (1), pp. 80. Date of Electronic Publication: 2025 Sep 09. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 9918715987606676 Publication Model: Electronic Cited Medium: Internet ISSN: 2731-913X (Electronic) Linking ISSN: 2731913X NLM ISO Abbreviation: BMC Glob Public Health Subsets: PubMed not MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 2731-913X |
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| DOI: | 10.1186/s44263-025-00201-6 |
