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From benchmarking alignment of genome assemblies to IMGT annotation: the paradigm of the bovine Bos taurus T cell receptor (TRG) locus.

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Title: From benchmarking alignment of genome assemblies to IMGT annotation: the paradigm of the bovine Bos taurus T cell receptor (TRG) locus.
Authors: Zhou H; Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Suita, Japan.; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan., Jiko C; Division of Radiation Life Science, Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka, Japan., Gerle C; Life Science Research Infrastructure Group, RIKEN SPring-8 Center, Sayo, Japan., Lefranc MP; IMGT®, the international ImMunoGeneTics information system® (IMGT), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), UMR 9002 Centre National de la Recherche Scientifique (CNRS), Université de Montpellier (UM), Montpellier Cedex 5, France., Katoh K; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan. katoh@ifrec.osaka-u.ac.jp., Standley DM; Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Suita, Japan. standley@biken.osaka-u.ac.jp.; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan. standley@biken.osaka-u.ac.jp.
Source: BMC genomics [BMC Genomics] 2025 Sep 25; Vol. 26 (1), pp. 809. Date of Electronic Publication: 2025 Sep 25.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
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ISSN:1471-2164
DOI:10.1186/s12864-025-12081-z