From benchmarking alignment of genome assemblies to IMGT annotation: the paradigm of the bovine Bos taurus T cell receptor (TRG) locus.

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Title: From benchmarking alignment of genome assemblies to IMGT annotation: the paradigm of the bovine Bos taurus T cell receptor (TRG) locus.
Authors: Zhou H; Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Suita, Japan.; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan., Jiko C; Division of Radiation Life Science, Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka, Japan., Gerle C; Life Science Research Infrastructure Group, RIKEN SPring-8 Center, Sayo, Japan., Lefranc MP; IMGT®, the international ImMunoGeneTics information system® (IMGT), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), UMR 9002 Centre National de la Recherche Scientifique (CNRS), Université de Montpellier (UM), Montpellier Cedex 5, France., Katoh K; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan. katoh@ifrec.osaka-u.ac.jp., Standley DM; Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Suita, Japan. standley@biken.osaka-u.ac.jp.; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan. standley@biken.osaka-u.ac.jp.
Source: BMC genomics [BMC Genomics] 2025 Sep 25; Vol. 26 (1), pp. 809. Date of Electronic Publication: 2025 Sep 25.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: From benchmarking alignment of genome assemblies to IMGT annotation: the paradigm of the bovine Bos taurus T cell receptor (TRG) locus.
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  Data: <searchLink fieldCode="AU" term="%22Zhou+H%22">Zhou H</searchLink>; Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Suita, Japan.; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan.<br /><searchLink fieldCode="AU" term="%22Jiko+C%22">Jiko C</searchLink>; Division of Radiation Life Science, Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka, Japan.<br /><searchLink fieldCode="AU" term="%22Gerle+C%22">Gerle C</searchLink>; Life Science Research Infrastructure Group, RIKEN SPring-8 Center, Sayo, Japan.<br /><searchLink fieldCode="AU" term="%22Lefranc+MP%22">Lefranc MP</searchLink>; IMGT®, the international ImMunoGeneTics information system® (IMGT), Laboratoire d'ImmunoGénétique Moléculaire (LIGM), Institut de Génétique Humaine (IGH), UMR 9002 Centre National de la Recherche Scientifique (CNRS), Université de Montpellier (UM), Montpellier Cedex 5, France.<br /><searchLink fieldCode="AU" term="%22Katoh+K%22">Katoh K</searchLink>; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan. katoh@ifrec.osaka-u.ac.jp.<br /><searchLink fieldCode="AU" term="%22Standley+DM%22">Standley DM</searchLink>; Department of Genome Informatics, Research Institute for Microbial Diseases, Osaka University, Suita, Japan. standley@biken.osaka-u.ac.jp.; Department of Systems Immunology, Immunology Frontier Research Center, Osaka University, Suita, Japan. standley@biken.osaka-u.ac.jp.
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  Data: <searchLink fieldCode="JN" term="%22100965258%22">BMC genomics</searchLink> [BMC Genomics] 2025 Sep 25; Vol. 26 (1), pp. 809. <i>Date of Electronic Publication: </i>2025 Sep 25.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22BioMed+Central%22">BioMed Central </searchLink><i>Country of Publication: </i>England <i>NLM ID: </i>100965258 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1471-2164 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2214712164%22">14712164 </searchLink><i>NLM ISO Abbreviation: </i>BMC Genomics <i>Subsets: </i>MEDLINE
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