Koina: Democratizing machine learning for proteomics research.

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Title: Koina: Democratizing machine learning for proteomics research.
Authors: Lautenbacher L; Computational Mass Spectrometry, Technical University of Munich (TUM), Freising, Germany.; Munich Data Science Institute, Technical University of Munich, Garching, Germany., Yang KL; Gilbert S. Omenn Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Kockmann T; Functional Genomics Center Zurich (FGCZ) - University of Zurich | ETH Zurich, Winterthurerstrasse 190, CH-, Zurich, Switzerland., Panse C; Functional Genomics Center Zurich (FGCZ) - University of Zurich | ETH Zurich, Winterthurerstrasse 190, CH-, Zurich, Switzerland.; Swiss Institute of Bioinformatics (SIB), Quartier Sorge - Batiment Amphipole, CH-, Lausanne, Switzerland., Gabriel W; Computational Mass Spectrometry, Technical University of Munich (TUM), Freising, Germany., Bold D; Computational Mass Spectrometry, Technical University of Munich (TUM), Freising, Germany., Kahl E; Computational Mass Spectrometry, Technical University of Munich (TUM), Freising, Germany., Chambers M; Department of Genome Sciences, University of Washington, Seattle, WA, USA., MacLean BX; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Li K; Gilbert S. Omenn Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Yu F; Department of Pathology, University of Michigan, Ann Arbor, MI, USA., Searle BC; Pelotonia Institute for Immuno-Oncology, The Ohio State University Comprehensive Cancer Center, Columbus, Ohio, USA.; Department of Biomedical Informatics, The Ohio State University, Columbus, Ohio, USA.; Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, USA., Wilburn DB; Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio, USA.; Center for RNA Biology, The Ohio State University, Columbus, OH, US., Shahneh MRZ; Department of Computer Science, University of California Riverside, Riverside, CA, USA., Hong Y; Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, Bloomington, IN, USA., Tang H; Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, Bloomington, IN, USA., Wang M; Department of Computer Science, University of California Riverside, Riverside, CA, USA.; Virtual Multi-Omics Laboratory, The Internet, Riverside, CA, USA., Gabriels R; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium., Bouwmeester R; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium., Devreese R; VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium.; Department of Biomolecular Medicine, Ghent University, Ghent, Belgium., Angelis J; Computational Mass Spectrometry, Technical University of Munich (TUM), Freising, Germany., Sabidó E; Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Dr. Aiguader 88, Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Dr. Aiguader 88, Barcelona, Spain., Schmidt TK; MSAID GmbH, Garching, Germany., Nesvizhskii AI; Gilbert S. Omenn Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA. nesvi@med.umich.edu.; Department of Pathology, University of Michigan, Ann Arbor, MI, USA. nesvi@med.umich.edu., Wilhelm M; Computational Mass Spectrometry, Technical University of Munich (TUM), Freising, Germany. mathias.wilhelm@tum.de.; Munich Data Science Institute, Technical University of Munich, Garching, Germany. mathias.wilhelm@tum.de.
Source: Nature communications [Nat Commun] 2025 Nov 11; Vol. 16 (1), pp. 9933. Date of Electronic Publication: 2025 Nov 11.
Publication Type: Journal Article
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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ISSN:2041-1723
DOI:10.1038/s41467-025-64870-5