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Genomic and clinical epidemiology of SARS-CoV-2 in Lebanon: a prospective multicenter study 2020-2024.

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Title: Genomic and clinical epidemiology of SARS-CoV-2 in Lebanon: a prospective multicenter study 2020-2024.
Authors: Dakroub F; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon. fd31@aub.edu.lb.; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK. fd31@aub.edu.lb., Boutros CF; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Teixeira D; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK., Alkalamouni H; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon., Hamzah N; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon., Hourani N; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Haddara A; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Dalle S; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Khreis D; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Tawil E; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Baasiri S; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Zein ZE; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Naser M; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Korman R; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Sraj M; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Salameh Y; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Merhi S; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Faour K; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Tfaily N; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Damaj S; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon., Taleb M; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon., Ghanem S; Department of Pediatrics, Makassed General Hospital, Achrafieh, Beirut, Lebanon.; Department of Pediatrics, Hammoud Hospital University Medical Center, Saida, Lebanon., Dakdouki G; Department of Pediatrics, Hammoud Hospital University Medical Center, Saida, Lebanon., Shaker R; Department of Pediatrics, New Mazloum Hospital, Tripoli, North, Lebanon., Chokr I; Department of Pediatrics, Rafic Hariri University Hospital, Beirut, Lebanon., Breish D; Department of Pediatrics, Bekaa Hospital, Bekaa, Lebanon., Karam M; Department of Pediatrics, Keserwan Medical Center, Jounieh, Mount Lebanon, Lebanon., Melhem NM; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Medical Laboratory Sciences Program, Division of Health Professions, Faculty of Health Sciences, American University of Beirut, Beirut, Lebanon., Fayad AA; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon., Zaraket H; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon., Harrison EM; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK.; Department of Medicine, University of Cambridge, Cambridge, UK., Matar GM; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon. gmatar@aub.edu.lb.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon. gmatar@aub.edu.lb.; Center for Infectious Diseases Research, Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, 1107, Lebanon. gmatar@aub.edu.lb., Dbaibo GS; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon. gdbaibo@aub.edu.lb.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon. gdbaibo@aub.edu.lb.; Center for Infectious Diseases Research, Department of Pediatrics and Adolescent Medicine, American University of Beirut Medical Center, Beirut, 1107, Lebanon. gdbaibo@aub.edu.lb.
Source: BMC infectious diseases [BMC Infect Dis] 2026 Jan 28; Vol. 26 (1). Date of Electronic Publication: 2026 Jan 28.
Publication Type: Journal Article; Multicenter Study
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100968551 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2334 (Electronic) Linking ISSN: 14712334 NLM ISO Abbreviation: BMC Infect Dis Subsets: MEDLINE
Database: MEDLINE Ultimate
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Items – Name: Title
  Label: Title
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  Data: Genomic and clinical epidemiology of SARS-CoV-2 in Lebanon: a prospective multicenter study 2020-2024.
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  Data: <searchLink fieldCode="AU" term="%22Dakroub+F%22">Dakroub F</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon. fd31@aub.edu.lb.; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK. fd31@aub.edu.lb.<br /><searchLink fieldCode="AU" term="%22Boutros+CF%22">Boutros CF</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Teixeira+D%22">Teixeira D</searchLink>; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK.<br /><searchLink fieldCode="AU" term="%22Alkalamouni+H%22">Alkalamouni H</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Hamzah+N%22">Hamzah N</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Hourani+N%22">Hourani N</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Haddara+A%22">Haddara A</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Dalle+S%22">Dalle S</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Khreis+D%22">Khreis D</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Tawil+E%22">Tawil E</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Baasiri+S%22">Baasiri S</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Zein+ZE%22">Zein ZE</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Naser+M%22">Naser M</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Korman+R%22">Korman R</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Sraj+M%22">Sraj M</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Salameh+Y%22">Salameh Y</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Merhi+S%22">Merhi S</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Faour+K%22">Faour K</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Tfaily+N%22">Tfaily N</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Damaj+S%22">Damaj S</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Taleb+M%22">Taleb M</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Ghanem+S%22">Ghanem S</searchLink>; Department of Pediatrics, Makassed General Hospital, Achrafieh, Beirut, Lebanon.; Department of Pediatrics, Hammoud Hospital University Medical Center, Saida, Lebanon.<br /><searchLink fieldCode="AU" term="%22Dakdouki+G%22">Dakdouki G</searchLink>; Department of Pediatrics, Hammoud Hospital University Medical Center, Saida, Lebanon.<br /><searchLink fieldCode="AU" term="%22Shaker+R%22">Shaker R</searchLink>; Department of Pediatrics, New Mazloum Hospital, Tripoli, North, Lebanon.<br /><searchLink fieldCode="AU" term="%22Chokr+I%22">Chokr I</searchLink>; Department of Pediatrics, Rafic Hariri University Hospital, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Breish+D%22">Breish D</searchLink>; Department of Pediatrics, Bekaa Hospital, Bekaa, Lebanon.<br /><searchLink fieldCode="AU" term="%22Karam+M%22">Karam M</searchLink>; Department of Pediatrics, Keserwan Medical Center, Jounieh, Mount Lebanon, Lebanon.<br /><searchLink fieldCode="AU" term="%22Melhem+NM%22">Melhem NM</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Medical Laboratory Sciences Program, Division of Health Professions, Faculty of Health Sciences, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Fayad+AA%22">Fayad AA</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Zaraket+H%22">Zaraket H</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon.<br /><searchLink fieldCode="AU" term="%22Harrison+EM%22">Harrison EM</searchLink>; Parasites and Microbes Programme, Wellcome Sanger Institute, Hinxton, UK.; Department of Medicine, University of Cambridge, Cambridge, UK.<br /><searchLink fieldCode="AU" term="%22Matar+GM%22">Matar GM</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon. gmatar@aub.edu.lb.; Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, Lebanon. gmatar@aub.edu.lb.; Center for Infectious Diseases Research, Department of Experimental Pathology, Immunology, and Microbiology, Faculty of Medicine, American University of Beirut, Beirut, 1107, Lebanon. gmatar@aub.edu.lb.<br /><searchLink fieldCode="AU" term="%22Dbaibo+GS%22">Dbaibo GS</searchLink>; Center for Infectious Diseases Research (CIDR) and WHO Collaborating Center for Reference and Research on Bacterial Pathogens, American University of Beirut, Beirut, Lebanon. gdbaibo@aub.edu.lb.; Department of Pediatrics and Adolescent Medicine, American University of Beirut, Beirut, Lebanon. gdbaibo@aub.edu.lb.; Center for Infectious Diseases Research, Department of Pediatrics and Adolescent Medicine, American University of Beirut Medical Center, Beirut, 1107, Lebanon. gdbaibo@aub.edu.lb.
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