Phased-assembly-driven pangenome graphs for structural variant genotyping and complex trait mapping in dairy cattle.
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| Title: | Phased-assembly-driven pangenome graphs for structural variant genotyping and complex trait mapping in dairy cattle. |
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| Authors: | Yang L; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA.; Department of Animal and Avian Sciences, University of Maryland, College Park, MD, USA., Gao Y; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA.; Department of Animal and Avian Sciences, University of Maryland, College Park, MD, USA., Kuhn KL; USDA, ARS, U.S. Meat Animal Research Center (USMARC), Clay Center, NE, USA., Bhowmik N; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA., Li W; US Dairy Forage Research Center, USDA-ARS, Madison, WI, USA., Zanton G; US Dairy Forage Research Center, USDA-ARS, Madison, WI, USA., Fang L; Quantitative Genetics and Genomics (QGG), Aarhus University, Aarhus, Denmark., Cole JB; Council on Dairy Cattle Breeding, 4201 Northview Dr, Bowie, MD, USA.; Department of Animal Sciences, Donald Henry Barron Reproductive and Perinatal Biology Research Program, and the Genetics Institute, University of Florida, Gainesville, FL, USA.; Department of Animal Science, North Carolina State University, Raleigh, NC, USA.; Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, Canada., Li C; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA., Baldwin Vi RL; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA., Van Tassell CP; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA., Rosen BD; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA., Ma L; Department of Animal and Avian Sciences, University of Maryland, College Park, MD, USA., Smith TPL; US Dairy Forage Research Center, USDA-ARS, Madison, WI, USA. tplsmith@gmail.com., Liu GE; Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, USA. George.Liu@usda.gov. |
| Source: | Nature communications [Nat Commun] 2026 Jan 30; Vol. 17 (1). Date of Electronic Publication: 2026 Jan 30. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 2041-1723 |
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| DOI: | 10.1038/s41467-026-68807-4 |
