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Unveiling microbial communities with EasyAmplicon: A user-centric guide to perform amplicon sequencing data analysis.

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Title: Unveiling microbial communities with EasyAmplicon: A user-centric guide to perform amplicon sequencing data analysis.
Authors: Yousuf S; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Luo H; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Zeng M; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Chen L; Department of Vascular Surgery, Fu Xing Hospital Capital Medical University Beijing China., Ma T; State Key Laboratory of Herbage Improvement and Grassland Agro-Ecosystems, Centre for Grassland Microbiome, College of Pastoral Agriculture Science and Technology Lanzhou University Lanzhou Gansu China., Li X; Centre for Agricultural Resources Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences Shijiazhuang Hebei China., Zheng M; College of Environmental Science and Engineering North China Electric Power University Beijing China., Zhou X; State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences Beijing China., Chen L; Biomedical Innovation Center and Beijing Key Laboratory for Therapeutic Cancer Vaccines, Beijing Shijitan Hospital Capital Medical University Beijing China., Xi J; College of Natural Resources and Environment Northwest A&F University Yangling Shaanxi China., Lu H; Stomatology Hospital, School of Stomatology Zhejiang University School of Medicine, Zhejiang Provincial Clinical Research Center for Oral Diseases, Key Laboratory of Oral Biomedical Research of Zhejiang Province, Cancer Center of Zhejiang University, Engineering Research Center of Oral Biomaterials and Devices of Zhejiang Province Hangzhou Zhejiang China., Cao H; Department of Microbiology University of Hong Kong Pok Fu Lam Hong Kong China., Ma X; Center for Energy Metabolism and Reproduction, Institute of Biomedicine and Biotechnology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences Shenzhen Guangdong China.; Department of Cardiology, Shenzhen Guangming District People's Hospital Shenzhen Guangdong China., Bian B; Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences The University of Tokyo Kashiwa, Chiba Japan., Zhang P; Innovative Genomics Institute University of California Berkeley California USA., Wu J; APC Microbiome Institute University College Cork Cork Ireland.; Department of Genetics University Medical Center Groningen, University of Groningen Groningen The Netherlands., Gan R; Department of Food Science and Nutrition, Faculty of Science The Hong Kong Polytechnic University Kowloon Hong Kong China., Jia B; Xianghu Laboratory Hangzhou Zhejiang China., Sun L; Faculty of Biological & Environmental Sciences University of Helsinki Helsinki Finland., Ju Z; Department of Ocean Science The Hong Kong University of Science and Technology Clear Water Bay Hongkong China., Gao Y; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Malik WA; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Ma C; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China.; School of Horticulture Anhui Agricultural University Hefei Anhui China., Lyu H; Department of Life Sciences, Imperial College of London London UK., Li Y; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Hou H; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Zhou Y; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China.; Guangdong Provincial Key Laboratory of Medical Molecular Diagnostics, The First Dongguan Affiliated Hospital, College of Basic Medicine Guangdong Medical University Dongguan Guangdong China., Bai D; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Wang Y; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Yang H; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China.; College of Life Sciences Qingdao Agricultural University Qingdao Shandong China., Xun J; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Du S; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China.; College of Life Sciences Northwest A&F University Yangling Shaanxi China., Zhang T; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China., Wan X; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China.; Guangdong Hybribio Biotech Co., Ltd. Chaozhou Guangdong China., Peng K; Jiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine Yangzhou University Yangzhou Jiangsu China., Xu S; School of Food and Biological Engineering Hefei University of Technology Hefei Anhui China., Wen T; Jiangsu Provincial Key Lab for Solid Organic Waste Utilization, Key Lab of Organic-Based Fertilizers of China, Jiangsu Collaborative Innovation Center for Solid Organic Wastes, Educational Ministry Engineering Center of Resource-Saving Fertilizers Nanjing Agricultural University Nanjing Jiangsu China., Chen T; State Key Laboratory for Quality Assurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences Beijing China., Liu YX; Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences Shenzhen Guangdong China.
Source: IMetaOmics [IMetaOmics] 2024 Nov 20; Vol. 1 (2), pp. e42. Date of Electronic Publication: 2024 Nov 20 (Print Publication: 2024).
Publication Type: Journal Article
Journal Info: Publisher: John Wiley & Sons Australia, Ltd on behalf of iMeta Science Country of Publication: Australia NLM ID: 9919033199506676 Publication Model: eCollection Cited Medium: Internet ISSN: 2996-9514 (Electronic) Linking ISSN: 29969514 NLM ISO Abbreviation: IMetaOmics Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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Description
ISSN:2996-9514
DOI:10.1002/imo2.42