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A comprehensive assessment of tandem repeat genotyping methods for Nanopore long-read genomes.

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Title: A comprehensive assessment of tandem repeat genotyping methods for Nanopore long-read genomes.
Authors: Aliyev E; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA., Avvaru A; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA., De Coster W; Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.; VIB Center for Molecular Neurology, VIB, Antwerp, Belgium., Arner GM; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA.; Department of Computer Sciences, Metropolitan State University of Denver, CO, USA., Nyaga DM; Liggins Institute, University of Auckland, New Zealand., Gibson SB; Department of Genome Sciences, University of Washington, Seattle, WA, USA., Weisburd B; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA., Gu B; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Gonzaga-Jauregui C; International Laboratory for Human Genome Research, Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de México, Querétaro, Mexico., Chaisson MJP; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.; Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, USA., Miller DE; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Division of Medical Genetics, Department of Pediatrics, University of Washington, Seattle, WA.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA.; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, WA., Ostrowski E; Liggins Institute, University of Auckland, New Zealand.; Department of Biological Sciences, University of Washington Bothell, WA, USA., Dashnow H; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA.
Corporate Authors: 1000 Genomes Long-Read Sequencing Consortium
Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Mar 03. Date of Electronic Publication: 2026 Mar 03.
Publication Type: Journal Article; Preprint
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Aliyev+E%22">Aliyev E</searchLink>; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA.<br /><searchLink fieldCode="AU" term="%22Avvaru+A%22">Avvaru A</searchLink>; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA.<br /><searchLink fieldCode="AU" term="%22De+Coster+W%22">De Coster W</searchLink>; Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.; VIB Center for Molecular Neurology, VIB, Antwerp, Belgium.<br /><searchLink fieldCode="AU" term="%22Arner+GM%22">Arner GM</searchLink>; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA.; Department of Computer Sciences, Metropolitan State University of Denver, CO, USA.<br /><searchLink fieldCode="AU" term="%22Nyaga+DM%22">Nyaga DM</searchLink>; Liggins Institute, University of Auckland, New Zealand.<br /><searchLink fieldCode="AU" term="%22Gibson+SB%22">Gibson SB</searchLink>; Department of Genome Sciences, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Weisburd+B%22">Weisburd B</searchLink>; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.<br /><searchLink fieldCode="AU" term="%22Gu+B%22">Gu B</searchLink>; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Gonzaga-Jauregui+C%22">Gonzaga-Jauregui C</searchLink>; International Laboratory for Human Genome Research, Laboratorio Internacional de Investigación sobre el Genoma Humano, Universidad Nacional Autónoma de México, Querétaro, Mexico.<br /><searchLink fieldCode="AU" term="%22Chaisson+MJP%22">Chaisson MJP</searchLink>; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.; Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, USA.<br /><searchLink fieldCode="AU" term="%22Miller+DE%22">Miller DE</searchLink>; Department of Genome Sciences, University of Washington, Seattle, WA, USA.; Division of Medical Genetics, Department of Pediatrics, University of Washington, Seattle, WA.; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, WA.; Brotman Baty Institute for Precision Medicine, University of Washington, Seattle, WA.<br /><searchLink fieldCode="AU" term="%22Ostrowski+E%22">Ostrowski E</searchLink>; Liggins Institute, University of Auckland, New Zealand.; Department of Biological Sciences, University of Washington Bothell, WA, USA.<br /><searchLink fieldCode="AU" term="%22Dashnow+H%22">Dashnow H</searchLink>; Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, USA.
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              Text: 2026 Mar 03
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