Impact of wet- and dry-lab workflows on genome assembly, typing and enterotoxin gene detection in whole-genome sequencing of foodborne Staphylococcus aureus.
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| Title: | Impact of wet- and dry-lab workflows on genome assembly, typing and enterotoxin gene detection in whole-genome sequencing of foodborne Staphylococcus aureus. |
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| Authors: | Vingadassalon N; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France., Hennekinne JA; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France., Nia Y; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France., Maurischat S; German Federal Institute for Risk Assessment (BfR), Department Biological Safety, 10589, Berlin, Germany., Borowiak M; German Federal Institute for Risk Assessment (BfR), Department Biological Safety, 10589, Berlin, Germany., Byrne B; Food Microbiology Division, Department of Agriculture, Food and the Marine Laboratories, Backweston, Celbridge, Co. Kildare, Ireland., Dygico LK; Food Microbiology Division, Department of Agriculture, Food and the Marine Laboratories, Backweston, Celbridge, Co. Kildare, Ireland., Ciupescu L; Institute for Hygiene and Veterinary Public Health, Microbiology Department, 041293, Bucharest, Romania., Guedes H; National Institute for Agricultural and Veterinary Research (INIAV), I.P., Vila do Conde, Portugal., Almeida G; National Institute for Agricultural and Veterinary Research (INIAV), I.P., Vila do Conde, Portugal., Rola J; National Veterinary Research Institute, 24-100, Pulawy, Poland., Bomba A; National Veterinary Research Institute, 24-100, Pulawy, Poland., Kibilds J; Institute of Food Safety, Animal Health and Environment 'BIOR', Riga, LV-1076, Latvia., Kubicova Z; State Veterinary and Food Institute, Dolny Kubin, Slovak Republic., Mackiw E; Department of Food Safety and Health Risk Assessment, National Institute of Public Health NIH-National Research Institute, Chocimska 24 Str., 00-791, Warsaw, Poland., Kowalska J; Department of Food Safety and Health Risk Assessment, National Institute of Public Health NIH-National Research Institute, Chocimska 24 Str., 00-791, Warsaw, Poland., Romanó A; Agroscope, Department Food Microbial Systems, Research Group Microbiological Food Safety, 3003, Bern, Switzerland., Rojo LV; Agroscope, Department Food Microbial Systems, Research Group Microbiological Food Safety, 3003, Bern, Switzerland., Romano A; National Reference Laboratory for Coagulase Positive Staphylococci including S. aureus, Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta, 10148, Turin, Italy., Zuccon F; National Reference Laboratory for Coagulase Positive Staphylococci including S. aureus, Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta, 10148, Turin, Italy., Van Nieuwenhuysen T; Service Foodborne Pathogens, Sciensano, Brussels, Belgium., Bogaerts B; Transversal Activities in Applied Genomics, Sciensano, Brussels, Belgium., Vanneste K; Transversal Activities in Applied Genomics, Sciensano, Brussels, Belgium., Cavaiuolo M; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France. Electronic address: marina.cavaiuolo@anses.fr. |
| Source: | International journal of food microbiology [Int J Food Microbiol] 2026 Jun 16; Vol. 455, pp. 111761. Date of Electronic Publication: 2026 Apr 03. |
| Publication Type: | Journal Article |
| Journal Info: | Publisher: Elsevier Science Publishers Country of Publication: Netherlands NLM ID: 8412849 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-3460 (Electronic) Linking ISSN: 01681605 NLM ISO Abbreviation: Int J Food Microbiol Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
| FullText | Text: Availability: 0 |
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| Header | DbId: mdl DbLabel: MEDLINE Ultimate An: 41965222 AccessLevel: 2 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: Impact of wet- and dry-lab workflows on genome assembly, typing and enterotoxin gene detection in whole-genome sequencing of foodborne Staphylococcus aureus. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AU" term="%22Vingadassalon+N%22">Vingadassalon N</searchLink>; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France.<br /><searchLink fieldCode="AU" term="%22Hennekinne+JA%22">Hennekinne JA</searchLink>; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France.<br /><searchLink fieldCode="AU" term="%22Nia+Y%22">Nia Y</searchLink>; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France.<br /><searchLink fieldCode="AU" term="%22Maurischat+S%22">Maurischat S</searchLink>; German Federal Institute for Risk Assessment (BfR), Department Biological Safety, 10589, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Borowiak+M%22">Borowiak M</searchLink>; German Federal Institute for Risk Assessment (BfR), Department Biological Safety, 10589, Berlin, Germany.<br /><searchLink fieldCode="AU" term="%22Byrne+B%22">Byrne B</searchLink>; Food Microbiology Division, Department of Agriculture, Food and the Marine Laboratories, Backweston, Celbridge, Co. Kildare, Ireland.<br /><searchLink fieldCode="AU" term="%22Dygico+LK%22">Dygico LK</searchLink>; Food Microbiology Division, Department of Agriculture, Food and the Marine Laboratories, Backweston, Celbridge, Co. Kildare, Ireland.<br /><searchLink fieldCode="AU" term="%22Ciupescu+L%22">Ciupescu L</searchLink>; Institute for Hygiene and Veterinary Public Health, Microbiology Department, 041293, Bucharest, Romania.<br /><searchLink fieldCode="AU" term="%22Guedes+H%22">Guedes H</searchLink>; National Institute for Agricultural and Veterinary Research (INIAV), I.P., Vila do Conde, Portugal.<br /><searchLink fieldCode="AU" term="%22Almeida+G%22">Almeida G</searchLink>; National Institute for Agricultural and Veterinary Research (INIAV), I.P., Vila do Conde, Portugal.<br /><searchLink fieldCode="AU" term="%22Rola+J%22">Rola J</searchLink>; National Veterinary Research Institute, 24-100, Pulawy, Poland.<br /><searchLink fieldCode="AU" term="%22Bomba+A%22">Bomba A</searchLink>; National Veterinary Research Institute, 24-100, Pulawy, Poland.<br /><searchLink fieldCode="AU" term="%22Kibilds+J%22">Kibilds J</searchLink>; Institute of Food Safety, Animal Health and Environment 'BIOR', Riga, LV-1076, Latvia.<br /><searchLink fieldCode="AU" term="%22Kubicova+Z%22">Kubicova Z</searchLink>; State Veterinary and Food Institute, Dolny Kubin, Slovak Republic.<br /><searchLink fieldCode="AU" term="%22Mackiw+E%22">Mackiw E</searchLink>; Department of Food Safety and Health Risk Assessment, National Institute of Public Health NIH-National Research Institute, Chocimska 24 Str., 00-791, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Kowalska+J%22">Kowalska J</searchLink>; Department of Food Safety and Health Risk Assessment, National Institute of Public Health NIH-National Research Institute, Chocimska 24 Str., 00-791, Warsaw, Poland.<br /><searchLink fieldCode="AU" term="%22Romanó+A%22">Romanó A</searchLink>; Agroscope, Department Food Microbial Systems, Research Group Microbiological Food Safety, 3003, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Rojo+LV%22">Rojo LV</searchLink>; Agroscope, Department Food Microbial Systems, Research Group Microbiological Food Safety, 3003, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Romano+A%22">Romano A</searchLink>; National Reference Laboratory for Coagulase Positive Staphylococci including S. aureus, Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta, 10148, Turin, Italy.<br /><searchLink fieldCode="AU" term="%22Zuccon+F%22">Zuccon F</searchLink>; National Reference Laboratory for Coagulase Positive Staphylococci including S. aureus, Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta, 10148, Turin, Italy.<br /><searchLink fieldCode="AU" term="%22Van+Nieuwenhuysen+T%22">Van Nieuwenhuysen T</searchLink>; Service Foodborne Pathogens, Sciensano, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Bogaerts+B%22">Bogaerts B</searchLink>; Transversal Activities in Applied Genomics, Sciensano, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Vanneste+K%22">Vanneste K</searchLink>; Transversal Activities in Applied Genomics, Sciensano, Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Cavaiuolo+M%22">Cavaiuolo M</searchLink>; ANSES, Laboratory for Food Safety, Staphylococcus, Bacillus and Clostridium Unit (SBCL), 94706, Maisons-Alfort, France. Electronic address: marina.cavaiuolo@anses.fr. – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%228412849%22">International journal of food microbiology</searchLink> [Int J Food Microbiol] 2026 Jun 16; Vol. 455, pp. 111761. <i>Date of Electronic Publication: </i>2026 Apr 03. – Name: TypePub Label: Publication Type Group: TypPub Data: Journal Article – Name: TitleSource Label: Journal Info Group: Src Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Elsevier+Science+Publishers%22">Elsevier Science Publishers </searchLink><i>Country of Publication: </i>Netherlands <i>NLM ID: </i>8412849 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1879-3460 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2201681605%22">01681605 </searchLink><i>NLM ISO Abbreviation: </i>Int J Food Microbiol <i>Subsets: </i>MEDLINE |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=mdl&AN=41965222 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1016/j.ijfoodmicro.2026.111761 Languages: – Code: eng Text: English PhysicalDescription: Pagination: StartPage: 111761 Titles: – TitleFull: Impact of wet- and dry-lab workflows on genome assembly, typing and enterotoxin gene detection in whole-genome sequencing of foodborne Staphylococcus aureus. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Vingadassalon N – PersonEntity: Name: NameFull: Hennekinne JA – PersonEntity: Name: NameFull: Nia Y – PersonEntity: Name: NameFull: Maurischat S – PersonEntity: Name: NameFull: Borowiak M – PersonEntity: Name: NameFull: Byrne B – PersonEntity: Name: NameFull: Dygico LK – PersonEntity: Name: NameFull: Ciupescu L – PersonEntity: Name: NameFull: Guedes H – PersonEntity: Name: NameFull: Almeida G – PersonEntity: Name: NameFull: Rola J – PersonEntity: Name: NameFull: Bomba A – PersonEntity: Name: NameFull: Kibilds J – PersonEntity: Name: NameFull: Kubicova Z – PersonEntity: Name: NameFull: Mackiw E – PersonEntity: Name: NameFull: Kowalska J – PersonEntity: Name: NameFull: Romanó A – PersonEntity: Name: NameFull: Rojo LV – PersonEntity: Name: NameFull: Romano A – PersonEntity: Name: NameFull: Zuccon F – PersonEntity: Name: NameFull: Van Nieuwenhuysen T – PersonEntity: Name: NameFull: Bogaerts B – PersonEntity: Name: NameFull: Vanneste K – PersonEntity: Name: NameFull: Cavaiuolo M IsPartOfRelationships: – BibEntity: Dates: – D: 16 M: 06 Text: 2026 Jun 16 Type: published Y: 2026 Identifiers: – Type: issn-electronic Value: 1879-3460 Numbering: – Type: volume Value: 455 Titles: – TitleFull: International journal of food microbiology Type: main |
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